| Time | Speaker |
|---|---|
| 08:00-08:45 | Registration and poster hanging |
| 08:45-09:00 | Welcome Address Jonas Ibn-Salem |
Session I: Epigenomics, stem cell biology and differentiation: |
|
| 09:00-09:40 | Logical modeling of lymphoid and myeloid cell specification and trans-differentiation Denis Thieffry, École Normale Supérior, Paris, France |
| 09:40-10:00 | Integrative analysis reveals significant differences between super and stretch enhancers Aziz Khan, University of Oslo, Norway |
| 10:00-10:20 | Evolution and development of human pluripotency by co-option of intrinsic retroviruses Manvendra Singh, Max-Delbrück Centre for Molecular Medicine, Berlin, Germany |
| 10:20-10:40 | The role of transposable elements in alternative splicing regulation during early development Quirze Rovira, Centre for Genomic Regulation, Barcelona, Spain |
| 10:40-11:10 | Black Coffee Break |
Session II: Systems biology of gene regulation |
|
| 11:10-11:50 | Determinants of yeast cell growth in individual cells and for a cell population Edda Klipp, Humboldt-Universität zu Berlin, Germany |
| 11:50-12:10 | The signal in the noise: Stochastic estrogen dependent transcription in single cells Stephan Baumgaertner, IMB, Mainz, Germany |
| 12:10-12:30 | Inference of Gene Regulatory Networks from Extensive Knock-Down Data Kolja Becker, IMB, Mainz, Germany |
| 12:30-12:50 | Flash Presentations |
| 12:50-14:50 | Lunch & Poster session | Session III: Integration of multilevel datasets and prediction algorithms: |
| 14:50:-15:30 | Computational biology of post-transcriptional gene regulation Uwe Ohler, Max Delbrück Center for Molecular Medicine, Berlin, Germany |
| 15:30-15:50 | RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections Jaime Castro-Mondragon, Aix-Marseille Univ, Marseille, France |
| 15:50-16:10 | Detecting Horizontal Gene Transfer by Mapping Sequencing Reads Across Species Boundaries Kathrin Trappe, Robert Koch Institute, Berlin, Germany |
| 16:10-16:40 | Strong Coffee Break |
Session IV: Higher order chromatin structure: |
|
| 16:40-17:20 | Higher order chromatin structure and gene regulation in health and disease Judith Zaugg, EMBL, Heidelberg, Germany |
| 17:20-17:40 | CTCF-mediated intragenic chromatin looping regulates alternative exon usage Mariana Ruiz Velasco Leyva, EMBL, Heidelberg, Germany |
| 17:40-18:00 | Сell-type specific chromatin organization of the region harboring chicken alpha-globin gene domain Aleksandra Galitsyna, Moscow State University, Moscow, Russia |
| 18:00-18-10 | Company presentation: ENPICOM |
| 18:10-18:25 | Award ceromony & closing remarks |
| 20:00-22:00 | Dinner & Social Event |
Poster
| # | Author | Title |
|---|---|---|
| P1 | Tommaso, Andreani | Transcription coupled RNA processing during gut homeostasis |
| P2 | Androsova, Ganna | Study-driven bias effects on disease-specific network extraction |
| P3 | Angerer, Philipp | Destiny 2.0″ diffusion maps and pseudo time inference for large-scale single-cell data in R |
| P4 | Baumgaertner, Stephan | The signal in the noise: Stochastic estrogen dependent transcription in single cells |
| P5 | Becker, Kolja | Inference of Gene Regulatory Networks from Extensive Knock-Down Data |
| P6 | Bleckwehl, Tore | Epigenetic control of pluripotency enhancers state as a novel germline competence mechanism |
| P7 | Castro-Mondragon, Jaime | RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding |
| P8 | Dube, Gaurav | Phylo-OMICs of Cochliobolus fungi: a case study of ABC transporters |
| P9 | Eigenbrod, Ole | Discovering molecular signatures of extreme physiology using African mole-rats |
| P10 | El Amrani, Khadija | Gene expression profile based sample classification |
| P11 | Fonseca Costa, Sara | Model-Based Inference of Photoperiod and Age Related Changes in Circadian Oscillators |
| P12 | Fournier, David | Histone code and higher-order chromatin folding: A hypothesis |
| P13 | Fust, Annika | Assign open chromatin sites of ATAC-seq data to transcription factor binding sites and related genes |
| P14 | Galitsyna, Aleksandra | Cell-type specific chromatin organization of the region harboring chicken alpha-globin gene domain |
| P15 | Georgomanolis, Theodoros | Exploiting native forces to capture chromosome conformation in non-crosslinked eukaryotic nuclei |
| P16 | Ibn-Salem, Jonas | Prediction of chromatin looping from CTCF motifs and ChIP-seq profiles |
| P17 | Kargapolova, Yulia | CSTF2tau sCLIP reveals a novel function of the protein in alternative processing of snRNAs. |
| P18 | Klemm, Paul | Identify Novel Noncoding RNA Transcripts Using a Visual Analytics Workflow |
| P19 | Krakau, Sabrina | Capturing protein-RNA interaction footprints from iCLIP-seq data |
| P20 | Kruse, Kai | Kai-C: An Analysis Platform and Computational Framework to Explore the 3D Genome |
| P21 | Lemos, Mikael | The role of non-protein coding RNAs controlling epigenetic modifications in T cell differentiation |
| P22 | Lim, Su Bin | Integrative Genomic Approach Identifies Prognostic ECM-related Genes for Early-Stage Non-Small Cell |
| P23 | Loka, Tobias | Privacy protection in NGS procedures using a real-time read filtering approach |
| P24 | Marini, Federico | pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components |
| P25 | Meiers, Sascha | Functional impact of genomic rearrangements on chromatin organization and transcriptional regulation |
| P26 | More, Piyush | Gene repressions assist etoposide-mediated cytotoxicity |
| P27 | Nikolic, Milos | GARLIC: A Toolkit for Etiologically Connecting Diseases and Cell Type-Specific Regulatory Maps |
| P28 | Otto, Raik | Robust In-Silico identification of sequenced Cancer Cell Lines |
| P29 | A., Merve | Identification of RNA binding proteins in yeast |
| P30 | Pereira, Bruno | Long non-coding RNA interaction with MED12 in X-linked intellectual disability syndrome |
| P31 | Polychronopoulos, Dimitris | CNEr: a toolkit for exploring extreme noncoding conservation |
| P32 | Poplawski, Alicia | Advantages and pitfalls in common used RNA-seq sample size tools |
| P33 | Ruiz Velasco Leyva, Mariana | CTCF-mediated intragenic chromatin looping regulates alternative exon usage |
| P34 | Sehlke, Robert | Integration of two Drosophila insulin mutant models reveals tissue-specific mechanisms of longevity |
| P35 | Srivastava, Mitul | Unravelling the mechanism of protein degradation and rescue — A computational approach |
| P36 | Talyan, Sweta | Improving the Genome-wide prediction of Human processed pseudogene |
| P37 | Trappe, Kathrin | Detecting Horizontal Gene Transfer by Mapping Sequencing Reads Across Species Boundaries |
| P38 | Wichmann, Alexander | Comparative gene expression profiles and methylation changes in untreated and irradiated fibroblasts |
| P39 | Wieland, Martin Alexander | Axon Terminal Structure of an Ultra Precise Motoneuron |